PH01002036G0280's details annotation
1.Annotation
ICBR annotation: proteasome subunit, putative, expressed
Blast result AT5G15610 : 2.00E-135
Blast annotation: Proteasome component (PCI) domain protein
2.Location
Scaffold: PH01002036
Strand: +
| Region | Start | End |
| gene | 218876 | 222321 |
| mRNA | 218876 | 222321 |
| exon | 218876 | 219414 |
| exon | 219467 | 219605 |
| exon | 219729 | 219941 |
| exon | 220051 | 220195 |
| exon | 220697 | 220847 |
| exon | 220966 | 221075 |
| exon | 221155 | 221252 |
| exon | 221379 | 221448 |
| exon | 221662 | 222321 |
| CDS | 219129 | 219414 |
| CDS | 219467 | 219605 |
| CDS | 219729 | 219941 |
| CDS | 220051 | 220195 |
| CDS | 220697 | 220847 |
| CDS | 220966 | 221075 |
| CDS | 221155 | 221252 |
| CDS | 221379 | 221448 |
| CDS | 221662 | 221751 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000537 | Ribosome eukaryotic translation initiation factor 3 complex, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01399.26 | PCI | 262 | 363 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003743 | translation initiation factor activity |
| GO:0005515 | protein binding |
| GO:0005737 | cytoplasm |
| GO:0005852 | eukaryotic translation initiation factor 3 complex |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.