PH01002038G0240's details annotation
1.Annotation
ICBR annotation: glucan endo-1,3-beta-glucosidase precursor, putative, expressed
Blast result AT5G55180 : 2.00E-117
Blast annotation: O-Glycosyl hydrolases family 17 protein
2.Location
Scaffold: PH01002038
Strand: -
| Region | Start | End |
| gene | 134272 | 136271 |
| mRNA | 134272 | 136271 |
| exon | 134272 | 135696 |
| exon | 135770 | 136056 |
| exon | 136149 | 136271 |
| CDS | 134698 | 135696 |
| CDS | 135770 | 136056 |
| CDS | 136149 | 136218 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000181 |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00332.17 | Glyco_hydro_17 | 26 | 285 |
| PF00332.17 | Glyco_hydro_17 | 288 | 361 |
| PF07983.12 | X8 | 367 | 438 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.