PH01002045G0170's details annotation
1.Annotation
ICBR annotation: Alg9-like mannosyltransferase protein, putative, expressed
Blast result AT1G16900 : 8.80E-81
Blast annotation: Alg9-like mannosyltransferase family
2.Location
Scaffold: PH01002045
Strand: +
| Region | Start | End |
| gene | 91831 | 99061 |
| mRNA | 91831 | 99061 |
| exon | 91831 | 94841 |
| exon | 96163 | 96250 |
| exon | 96936 | 97231 |
| exon | 98000 | 98109 |
| exon | 98654 | 98850 |
| exon | 98938 | 99061 |
| CDS | 94735 | 94841 |
| CDS | 96163 | 96250 |
| CDS | 96936 | 97231 |
| CDS | 98000 | 98109 |
| CDS | 98654 | 98850 |
| CDS | 98938 | 99045 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000264 | intrinsic to endoplasmic reticulum membrane, GT22 GlycosylTransferases HD-ZIP Transcription_Regulator(from PlantTFDB) HB-HD-ZIP Transcription_Regulator(from iTAK) oxoglutarate dehydrogenase (succinyl-transferring) activity, thiamine pyrophosphate binding, oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, Citrate_cycle_(TCA_cycle) Various_types_of_N-glycan_biosynthesis N-Glycan_biosynthesis Lysine_degradation Tryptophan_metabolism carbon-nitrogen ligase activity, with glutamine as amido-N-donor, tricarboxylic acid cycle, GPI anchor biosynthetic process, |
| coexpression network | CFinderM001559 | GT22 GlycosylTransferases intrinsic to endoplasmic reticulum membrane, GPI anchor metabolic process, GPI anchor biosynthetic process, N-Glycan_biosynthesis Various_types_of_N-glycan_biosynthesis |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| GlycosylTransferases | GT22 |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03901.16 | Glyco_transf_22 | 66 | 185 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| N-Glycan biosynthesis | alpha-1,2-mannosyltransferase [EC:2.4.1.259;EC:2.4.1.261] | ko00510 | K03846 |
| Various types of N-glycan biosynthesis | alpha-1,2-mannosyltransferase [EC:2.4.1.259;EC:2.4.1.261] | ko00513 | K03846 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006506 | GPI anchor biosynthetic process |
| GO:0016757 | transferase activity, transferring glycosyl groups |
| GO:0031227 | intrinsic to endoplasmic reticulum membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.