Annotation of co-expression genes

PH01002045G0300's details annotation

1.Annotation

ICBR annotation: RNA recognition motif containing protein, putative, expressed

Blast result AT2G28540 : 9.80E-34
Blast annotation: RNA binding (RRM/RBD/RNP motifs) family protein

2.Location

Scaffold: PH01002045
Strand: -

RegionStartEnd
gene152847159396
mRNA152847159396
exon152847154872
exon155259155336
exon156814156905
exon156997157045
exon157149157232
exon157659157759
exon157877158060
exon158686158846
exon158955159396
CDS153183154872
CDS155259155336
CDS156814156905
CDS156997157045
CDS157149157232
CDS157659157759
CDS157877158060
CDS158686158846
CDS158955159047

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000078RLK-Pelle_LRR-V (from iTAK)
RNA_degradation

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF14570.5zf-RING_4931
PF00076.21RRM_1151208

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
RNA degradationCCR4-NOT transcription complex subunit 4 [EC:6.3.2.1]ko03018K10643

10.Gene Ontology

GO AccessionGO Annotation
GO:0000166nucleotide binding
GO:0003676nucleic acid binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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