Annotation of co-expression genes

PH01002047G0280's details annotation

1.Annotation

ICBR annotation: tyrosine protein kinase domain containing protein, putative, expressed

Blast result AT5G15080 : 7.00E-173
Blast annotation: Protein kinase superfamily protein

2.Location

Scaffold: PH01002047
Strand: -

RegionStartEnd
gene151253158913
mRNA151253158913
exon151253152173
exon152862152985
exon153067153203
exon153743153878
exon153971154308
exon154552154625
exon156334156370
exon156658158913
CDS151665152173
CDS152862152985
CDS153067153203
CDS153743153878
CDS153971154308
CDS154552154625
CDS156334156370
CDS156658156847

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000008TKL-Pl-4 (from iTAK)
RLK-Pelle_RLCK-VIIa-2 (from iTAK)
transferase activity, transferring phosphorus-containing groups,
protein phosphorylation,
Spliceosome
protein kinase activity,
ATP binding,
protein serine/threonine kinase activity,
exocyst,
chloroplast,
coexpression networkCFinderM000101RLK-Pelle_RLCK-VIIa-2 (from iTAK)
response to heat,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF07714.16Pkinase_Tyr165440

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004672protein kinase activity
GO:0004674protein serine/threonine kinase activity
GO:0005524ATP binding
GO:0006468protein phosphorylation
GO:0016772transferase activity, transferring phosphorus-containing groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.