PH01002049G0150's details annotation
1.Annotation
ICBR annotation: WD domain, G-beta repeat domain containing protein
Blast result AT5G54200 : 3.50E-95
Blast annotation: Transducin/WD40 repeat-like superfamily protein
2.Location
Scaffold: PH01002049
Strand: +
| Region | Start | End |
| gene | 115033 | 121219 |
| mRNA | 115033 | 121219 |
| exon | 115033 | 119174 |
| exon | 119361 | 119451 |
| exon | 119630 | 119787 |
| exon | 119867 | 119918 |
| exon | 120013 | 120092 |
| exon | 120193 | 120286 |
| exon | 120377 | 121219 |
| CDS | 118104 | 119174 |
| CDS | 119361 | 119451 |
| CDS | 119630 | 119787 |
| CDS | 119867 | 119918 |
| CDS | 120013 | 120092 |
| CDS | 120193 | 120286 |
| CDS | 120377 | 120861 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00400.31 | WD40 | 253 | 284 |
| PF00400.31 | WD40 | 336 | 372 |
| PF00400.31 | WD40 | 378 | 414 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.