PH01002053G0310's details annotation
1.Annotation
ICBR annotation: DnaK family protein, putative, expressed
Blast result AT4G16660 : 0.00E+00
Blast annotation: heat shock protein 70 (Hsp 70) family protein
2.Location
Scaffold: PH01002053
Strand: -
| Region | Start | End |
| gene | 217990 | 225870 |
| mRNA | 217990 | 225870 |
| exon | 217990 | 219578 |
| exon | 219665 | 219737 |
| exon | 220025 | 220086 |
| exon | 220174 | 220230 |
| exon | 220758 | 220827 |
| exon | 220898 | 220998 |
| exon | 221080 | 221154 |
| exon | 221483 | 221644 |
| exon | 221732 | 222065 |
| exon | 222173 | 222309 |
| exon | 222432 | 222677 |
| exon | 223084 | 223266 |
| exon | 223621 | 223780 |
| exon | 224296 | 224528 |
| exon | 224737 | 225870 |
| CDS | 219357 | 219578 |
| CDS | 219665 | 219737 |
| CDS | 220025 | 220086 |
| CDS | 220174 | 220230 |
| CDS | 220758 | 220827 |
| CDS | 220898 | 220998 |
| CDS | 221080 | 221154 |
| CDS | 221483 | 221644 |
| CDS | 221732 | 222065 |
| CDS | 222173 | 222309 |
| CDS | 222432 | 222677 |
| CDS | 223084 | 223266 |
| CDS | 223621 | 223780 |
| CDS | 224296 | 224528 |
| CDS | 224737 | 225417 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00012.19 | HSP70 | 3 | 358 |
| PF00012.19 | HSP70 | 365 | 769 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Protein processing in endoplasmic reticulum | hypoxia up-regulated 1 | ko04141 | K09486 |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.