Annotation of co-expression genes

PH01002058G0210's details annotation

1.Annotation

ICBR annotation: NADPH reductase, putative, expressed

Blast result AT4G30210 : 0.00E+00
Blast annotation: P450 reductase 2

2.Location

Scaffold: PH01002058
Strand: -

RegionStartEnd
gene157783164778
mRNA157783164778
exon157783158356
exon158478158591
exon158681158803
exon158893158970
exon159057159206
exon159611159707
exon159795159946
exon160040160123
exon160212160440
exon160821160913
exon161018161209
exon161312161381
exon161465161501
exon161655161796
exon161968162044
exon162155162214
exon163057163224
exon164342164778
CDS158276158356
CDS158478158591
CDS158681158803
CDS158893158970
CDS159057159206
CDS159611159707
CDS159795159946
CDS160040160123
CDS160212160440
CDS160821160913
CDS161018161209
CDS161312161381
CDS161465161501
CDS161655161796
CDS161968162044
CDS162155162214
CDS163057163224
CDS164342164743

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000785CMGC_CDKL-Os (from iTAK)

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00258.24Flavodoxin_1176319
PF00667.19FAD_binding_1377599
PF00175.20NAD_binding_1636747

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005506iron ion binding
GO:0010181FMN binding
GO:0016491oxidoreductase activity
GO:0016772transferase activity, transferring phosphorus-containing groups
GO:0055114oxidation-reduction process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.