PH01002061G0340's details annotation
1.Annotation
ICBR annotation: actin, putative, expressed
Blast result AT5G43500 : 8.20E-28
Blast annotation: actin-related protein 9
2.Location
Scaffold: PH01002061
Strand: -
| Region | Start | End |
| gene | 202340 | 204621 |
| mRNA | 202340 | 204621 |
| exon | 202340 | 202770 |
| exon | 203274 | 203345 |
| exon | 203419 | 203478 |
| exon | 203556 | 203677 |
| exon | 204023 | 204095 |
| exon | 204244 | 204621 |
| CDS | 202723 | 202770 |
| CDS | 203274 | 203345 |
| CDS | 203419 | 203478 |
| CDS | 203556 | 203677 |
| CDS | 204023 | 204095 |
| CDS | 204244 | 204246 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00022.18 | Actin | 19 | 68 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.