PH01002064G0260's details annotation
1.Annotation
ICBR annotation: oxidoreductase, short chain dehydrogenase/reductase family, putative, expressed
Blast result AT1G67730 : 3.00E-104
Blast annotation: beta-ketoacyl reductase 1
2.Location
Scaffold: PH01002064
Strand: +
| Region | Start | End |
| gene | 169987 | 173992 |
| mRNA | 169987 | 173992 |
| exon | 169987 | 171357 |
| exon | 172694 | 172763 |
| exon | 173513 | 173992 |
| CDS | 170708 | 171357 |
| CDS | 172694 | 172763 |
| CDS | 173513 | 173770 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001489 | Steroid_hormone_biosynthesis Fatty_acid_elongation Biosynthesis_of_unsaturated_fatty_acids RNA_degradation |
| coexpression network | CFinderM001694 | TKL_CTR1-DRK-2 (from iTAK) mitochondrial respiratory chain complex IV, mitochondrial inner membrane, Steroid_hormone_biosynthesis Fatty_acid_elongation Biosynthesis_of_unsaturated_fatty_acids cytochrome-c oxidase activity, histone acetyltransferase activity, transcription cofactor activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00106.24 | adh_short | 58 | 251 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Fatty acid elongation | 17beta-estradiol 17-dehydrogenase / very-long-chain 3-oxoacyl-CoA reductase [EC:1.1.1.-] | ko00062 | K10251 |
| Steroid hormone biosynthesis | 17beta-estradiol 17-dehydrogenase / very-long-chain 3-oxoacyl-CoA reductase [EC:1.1.1.-] | ko00140 | K10251 |
| Biosynthesis of unsaturated fatty acids | 17beta-estradiol 17-dehydrogenase / very-long-chain 3-oxoacyl-CoA reductase [EC:1.1.1.-] | ko01040 | K10251 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008152 | metabolic process |
| GO:0016491 | oxidoreductase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.