PH01002066G0080's details annotation
1.Annotation
ICBR annotation: helix-loop-helix DNA-binding protein, putative, expressed
Blast result AT2G27230 : 1.00E-59
Blast annotation: transcription factor-related
2.Location
Scaffold: PH01002066
Strand: +
| Region | Start | End |
| gene | 63178 | 68866 |
| mRNA | 63178 | 68866 |
| exon | 63178 | 63470 |
| exon | 63786 | 63872 |
| exon | 64691 | 64780 |
| exon | 65117 | 65222 |
| exon | 65723 | 65782 |
| exon | 66192 | 67604 |
| exon | 67683 | 67784 |
| exon | 67875 | 68054 |
| exon | 68131 | 68256 |
| exon | 68339 | 68866 |
| CDS | 63388 | 63470 |
| CDS | 63786 | 63872 |
| CDS | 64691 | 64780 |
| CDS | 65117 | 65222 |
| CDS | 65723 | 65782 |
| CDS | 66192 | 67604 |
| CDS | 67683 | 67784 |
| CDS | 67875 | 68054 |
| CDS | 68131 | 68256 |
| CDS | 68339 | 68515 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF14215.5 | bHLH-MYC_N | 3 | 157 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0046983 | protein dimerization activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.