PH01002073G0100's details annotation
1.Annotation
ICBR annotation: 1,3-beta-glucan synthase component domain containing protein, expressed
Blast result AT5G13000 : 0
Blast annotation: glucan synthase-like 12
2.Location
Scaffold: PH01002073
Strand: -
| Region | Start | End |
| gene | 69998 | 80250 |
| mRNA | 69998 | 80250 |
| exon | 69998 | 70533 |
| exon | 70962 | 71147 |
| exon | 71366 | 71416 |
| exon | 71522 | 72319 |
| exon | 72401 | 72630 |
| exon | 72713 | 72825 |
| exon | 73145 | 73228 |
| exon | 73340 | 73458 |
| exon | 73536 | 73655 |
| exon | 74430 | 74574 |
| exon | 78010 | 78187 |
| exon | 78264 | 78332 |
| exon | 78451 | 78576 |
| exon | 78680 | 78789 |
| exon | 79417 | 79568 |
| exon | 79731 | 80250 |
| CDS | 70330 | 70533 |
| CDS | 70962 | 71147 |
| CDS | 71366 | 71416 |
| CDS | 71522 | 72319 |
| CDS | 72401 | 72630 |
| CDS | 72713 | 72825 |
| CDS | 73145 | 73228 |
| CDS | 73340 | 73458 |
| CDS | 73536 | 73655 |
| CDS | 74430 | 74574 |
| CDS | 78010 | 78187 |
| CDS | 78264 | 78332 |
| CDS | 78451 | 78576 |
| CDS | 78680 | 78789 |
| CDS | 79417 | 79568 |
| CDS | 79731 | 79733 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000502 | (1->3)-beta-D-glucan biosynthetic process, 1,3-beta-D-glucan synthase complex, 1,3-beta-D-glucan synthase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02364.14 | Glucan_synthase | 109 | 808 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000148 | 1,3-beta-D-glucan synthase complex |
| GO:0003843 | 1,3-beta-D-glucan synthase activity |
| GO:0006075 | (1->3)-beta-D-glucan biosynthetic process |
| GO:0016020 | membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.