PH01002078G0380's details annotation
1.Annotation
ICBR annotation: villin protein, putative, expressed
Blast result AT3G57410 : 2.00E-103
Blast annotation: villin 3
2.Location
Scaffold: PH01002078
Strand: -
| Region | Start | End |
| gene | 236628 | 241895 |
| mRNA | 236628 | 241895 |
| exon | 236628 | 237504 |
| exon | 237664 | 237954 |
| exon | 238526 | 238952 |
| exon | 240099 | 240231 |
| exon | 240314 | 240491 |
| exon | 240591 | 240827 |
| exon | 240913 | 240981 |
| exon | 241266 | 241895 |
| CDS | 236968 | 237504 |
| CDS | 237664 | 237954 |
| CDS | 238526 | 238952 |
| CDS | 240099 | 240231 |
| CDS | 240314 | 240491 |
| CDS | 240591 | 240827 |
| CDS | 240913 | 240981 |
| CDS | 241266 | 241349 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00626.21 | Gelsolin | 29 | 87 |
| PF00626.21 | Gelsolin | 125 | 196 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003779 | actin binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.