PH01002080G0420's details annotation
1.Annotation
ICBR annotation: mRNA-decapping enzyme, putative, expressed
Blast result AT1G08370 : 1.90E-87
Blast annotation: decapping 1
2.Location
Scaffold: PH01002080
Strand: +
| Region | Start | End |
| gene | 260819 | 266076 |
| mRNA | 260819 | 266076 |
| exon | 260819 | 261582 |
| exon | 261974 | 262118 |
| exon | 263009 | 263065 |
| exon | 263213 | 263336 |
| exon | 263599 | 264153 |
| exon | 264229 | 266076 |
| CDS | 261102 | 261582 |
| CDS | 261974 | 262118 |
| CDS | 263009 | 263065 |
| CDS | 263213 | 263336 |
| CDS | 263599 | 264153 |
| CDS | 264229 | 264282 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000494 | AGC_RSK-2 (from iTAK) Ubiquinone_and_other_terpenoid-quinone_biosynthesis RNA_degradation prenyltransferase activity, two-component sensor activity, voltage-gated chloride channel activity, ion channel activity, |
| coexpression network | CFinderM000576 | RNA_degradation |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF06058.12 | DCP1 | 24 | 138 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| RNA degradation | mRNA-decapping enzyme 1B [EC:3.-.-.-] | ko03018 | K12611 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.