PH01002083G0210's details annotation
1.Annotation
ICBR annotation: NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative, expressed
Blast result AT1G07180 : 0.00E+00
Blast annotation: alternative NAD(P)H dehydrogenase 1
2.Location
Scaffold: PH01002083
Strand: -
| Region | Start | End |
| gene | 134256 | 138638 |
| mRNA | 134256 | 138638 |
| exon | 134256 | 134586 |
| exon | 134670 | 134849 |
| exon | 135175 | 135289 |
| exon | 135501 | 135664 |
| exon | 135883 | 135948 |
| exon | 136042 | 136202 |
| exon | 136546 | 136762 |
| exon | 137986 | 138638 |
| CDS | 134434 | 134586 |
| CDS | 134670 | 134849 |
| CDS | 135175 | 135289 |
| CDS | 135501 | 135664 |
| CDS | 135883 | 135948 |
| CDS | 136042 | 136202 |
| CDS | 136546 | 136762 |
| CDS | 137986 | 138438 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001223 | chloroplast, C2C2-GATA Transcription_Regulator(from iTAK) GATA Transcription_Regulator(from PlantTFDB) Oxidative_phosphorylation |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07992.13 | Pyr_redox_2 | 66 | 398 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Oxidative phosphorylation | NADH dehydrogenase [EC:1.6.99.3] | ko00190 | K03885 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016491 | oxidoreductase activity |
| GO:0050660 | flavin adenine dinucleotide binding |
| GO:0055114 | oxidation-reduction process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.