PH01002084G0090's details annotation
1.Annotation
ICBR annotation: actin-related protein 2/3 complex subunit 4, putative, expressed
Blast result AT4G14147 : 2.30E-84
Blast annotation: protein binding
2.Location
Scaffold: PH01002084
Strand: -
| Region | Start | End |
| gene | 100579 | 106094 |
| mRNA | 100579 | 106094 |
| exon | 100579 | 101071 |
| exon | 102015 | 102104 |
| exon | 102455 | 102559 |
| exon | 102663 | 102740 |
| exon | 103920 | 103947 |
| exon | 104440 | 104492 |
| exon | 104632 | 104697 |
| exon | 104958 | 106094 |
| CDS | 100982 | 101071 |
| CDS | 102015 | 102104 |
| CDS | 102455 | 102559 |
| CDS | 102663 | 102740 |
| CDS | 103920 | 103947 |
| CDS | 104440 | 104492 |
| CDS | 104632 | 104697 |
| CDS | 104958 | 105014 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF05856.11 | ARPC4 | 19 | 186 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005856 | cytoskeleton |
| GO:0005885 | Arp2/3 protein complex |
| GO:0030041 | actin filament polymerization |
| GO:0034314 | Arp2/3 complex-mediated actin nucleation |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.