PH01002085G0060's details annotation
1.Annotation
ICBR annotation: microtubule associated protein, putative, expressed
Blast result AT5G55230 : 0.00E+00
Blast annotation: microtubule-associated proteins 65-1
2.Location
Scaffold: PH01002085
Strand: +
| Region | Start | End |
| gene | 20835 | 25085 |
| mRNA | 20835 | 25085 |
| exon | 20835 | 21131 |
| exon | 21309 | 21512 |
| exon | 21623 | 21934 |
| exon | 22303 | 22518 |
| exon | 22632 | 22775 |
| exon | 22878 | 23189 |
| exon | 23431 | 23518 |
| exon | 23705 | 23853 |
| exon | 23950 | 25085 |
| CDS | 21060 | 21131 |
| CDS | 21309 | 21512 |
| CDS | 21623 | 21934 |
| CDS | 22303 | 22518 |
| CDS | 22632 | 22775 |
| CDS | 22878 | 23189 |
| CDS | 23431 | 23518 |
| CDS | 23705 | 23853 |
| CDS | 23950 | 24228 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000991 | cation:chloride_symporter_activity proteasome_regulatory_particle Proteasome microtubule binding, cytokinesis ion transport, microtubule cytoskeleton organization, |
| coexpression network | CFinderM000992 | cation:chloride_symporter_activity proteasome_regulatory_particle microtubule binding, Proteasome ion transport, cytokinesis microtubule cytoskeleton organization, |
| coexpression network | CFinderM001000 | microtubule cytoskeleton organization, cytokinesis GTnc GlycosylTransferases RLK-Pelle_RLCK-V (from iTAK) RLK-Pelle_LRR-V (from iTAK) |
| coexpression network | CFinderM001811 | cytokinesis microtubule cytoskeleton organization, microtubule binding, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03999.11 | MAP65_ASE1 | 57 | 549 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000226 | microtubule cytoskeleton organization |
| GO:0000910 | cytokinesis |
| GO:0008017 | microtubule binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.