Annotation of co-expression genes

PH01002089G0030's details annotation

1.Annotation

ICBR annotation: glycosyl hydrolase family 47 domain contain protein, expressed

Blast result AT1G51590 : 4.10E-85
Blast annotation: alpha-mannosidase 1

2.Location

Scaffold: PH01002089
Strand: -

RegionStartEnd
gene2170431627
mRNA2170431627
exon2170422978
exon2307223242
exon2332423404
exon2472424838
exon2503825063
exon2614926238
exon2693127102
exon3034230454
exon3058330756
exon3087430921
exon3137631627
CDS2273022978
CDS2307223242
CDS2332423404
CDS2472424838
CDS2503825063
CDS2614926238
CDS2693127102
CDS3034230454
CDS3058330756
CDS3087430921
CDS3137631531

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001439CAMTA Transcription_Regulator(from PlantTFDB)
sphingolipid metabolic process,
glucosylceramidase activity,
mannosyl-oligosaccharide 1,2-alpha-mannosidase activity,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF01532.19Glyco_hydro_47165252
PF01532.19Glyco_hydro_47263430

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004571mannosyl-oligosaccharide 1,2-alpha-mannosidase activity
GO:0005509calcium ion binding
GO:0016020membrane

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.