PH01002098G0340's details annotation
1.Annotation
ICBR annotation: proline-rich protein 6, putative, expressed
Blast result AT5G16940 : 4.00E-52
Blast annotation: carbon-sulfur lyases
2.Location
Scaffold: PH01002098
Strand: -
| Region | Start | End |
| gene | 249650 | 250266 |
| mRNA | 249650 | 250266 |
| exon | 249650 | 250266 |
| CDS | 249760 | 250176 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001385 | cytoskeleton, regulation of actin filament polymerization, carbon-sulfur lyase activity, MYB-related Transcription_Regulator(from iTAK) MYB_related Transcription_Regulator(from PlantTFDB) RNA_transport |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04828.13 | GFA | 31 | 105 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008152 | metabolic process |
| GO:0016846 | carbon-sulfur lyase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.