PH01002102G0100's details annotation
1.Annotation
ICBR annotation: nitrilase, putative, expressed
Blast result AT5G22300 : 1.00E-145
Blast annotation: nitrilase 4
2.Location
Scaffold: PH01002102
Strand: +
| Region | Start | End |
| gene | 60336 | 62944 |
| mRNA | 60336 | 62944 |
| exon | 60336 | 60598 |
| exon | 60767 | 60958 |
| exon | 61864 | 62037 |
| exon | 62170 | 62451 |
| exon | 62615 | 62944 |
| CDS | 60418 | 60598 |
| CDS | 60767 | 60958 |
| CDS | 61864 | 62037 |
| CDS | 62170 | 62451 |
| CDS | 62615 | 62784 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00795.21 | CN_hydrolase | 31 | 313 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Cyanoamino acid metabolism | beta-cyano-L-alanine hydratase/nitrilase [EC:3.5.5.1;EC:3.5.5.4] | ko00460 | K13035 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006807 | nitrogen compound metabolic process |
| GO:0016810 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.