Annotation of co-expression genes

PH01002103G0390's details annotation

1.Annotation

ICBR annotation: erythronate-4-phosphate dehydrogenase domain containing protein, expressed

Blast result AT1G68010 : 7.00E-136
Blast annotation: hydroxypyruvate reductase

2.Location

Scaffold: PH01002103
Strand: -

RegionStartEnd
gene213037217290
mRNA213037217290
exon213037213312
exon213457213571
exon213691213735
exon213851213928
exon214118214225
exon215053215127
exon215343215423
exon215927216008
exon216381216502
exon216656216735
exon216868217003
exon217123217290
CDS213290213312
CDS213457213571
CDS213691213735
CDS213851213928
CDS214118214225
CDS215053215127
CDS215343215423
CDS215927216008
CDS216381216502
CDS216656216735
CDS216868217003
CDS217123217245

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF02826.182-Hacid_dh_C127291

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Glyoxylate and dicarboxylate metabolismhydroxypyruvate reductase 1ko00630K15893
289 Glycine, serine and threonine metabolismhydroxypyruvate reductase 1K15893

10.Gene Ontology

GO AccessionGO Annotation
GO:0016616oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0048037cofactor binding
GO:0055114oxidation-reduction process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.