Annotation of co-expression genes

PH01002104G0370's details annotation

1.Annotation

ICBR annotation: phosphatidylinositol kinase, putative, expressed

Blast result AT5G64070 : 0.00E+00
Blast annotation: phosphatidylinositol 4-OH kinase beta1

2.Location

Scaffold: PH01002104
Strand: -

RegionStartEnd
gene248163257217
mRNA248163257217
exon248163249047
exon249377249430
exon249848249952
exon250048250145
exon250722250791
exon251492251614
exon251682251762
exon252036252516
exon252769252901
exon253649253697
exon253846254015
exon254785256021
exon256090257217
CDS248793249047
CDS249377249430
CDS249848249952
CDS250048250145
CDS250722250791
CDS251492251614
CDS251682251762
CDS252036252516
CDS252769252901
CDS253649253697
CDS253846254015
CDS254785256021
CDS256090256224

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000008TKL-Pl-4 (from iTAK)
RLK-Pelle_RLCK-VIIa-2 (from iTAK)
transferase activity, transferring phosphorus-containing groups,
protein phosphorylation,
Spliceosome
protein kinase activity,
ATP binding,
protein serine/threonine kinase activity,
exocyst,
chloroplast,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00454.26PI3_PI4_kinase803911

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0016772transferase activity, transferring phosphorus-containing groups
GO:0016773phosphotransferase activity, alcohol group as acceptor

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.