PH01002105G0190's details annotation
1.Annotation
ICBR annotation: GATA zinc finger domain containing protein, expressed
Blast result AT5G66320 : 7.90E-40
Blast annotation: GATA transcription factor 5
2.Location
Scaffold: PH01002105
Strand: +
| Region | Start | End |
| gene | 151591 | 154209 |
| mRNA | 151591 | 154209 |
| exon | 151591 | 154209 |
| CDS | 152807 | 153412 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001185 | NF-YC Transcription_Regulator(from PlantTFDB) mediator complex, CCAAT-binding factor complex, GATA Transcription_Regulator(from PlantTFDB) C2C2-GATA Transcription_Regulator(from iTAK) Endocytosis RNA_polymerase_II_transcription_cofactor_activity sequence-specific DNA binding, sequence-specific DNA binding transcription factor activity, vesicle docking involved in exocytosis, regulation of transcription from RNA polymerase II promoter, regulation of transcription, DNA-dependent, vesicle-mediated transport, protein_heterodimerization_activity |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | C2C2-GATA |
| Transcription_Regulator(from PlantTFDB) | GATA |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00320.26 | GATA | 336 | 370 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003700 | sequence-specific DNA binding transcription factor activity |
| GO:0006355 | regulation of transcription, DNA-dependent |
| GO:0008270 | zinc ion binding |
| GO:0043565 | sequence-specific DNA binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.