PH01002106G0200's details annotation
1.Annotation
ICBR annotation: rhamnogalacturonate lyase, putative, expressed
Blast result AT1G09890 : 0.00E+00
Blast annotation: Rhamnogalacturonate lyase family protein
2.Location
Scaffold: PH01002106
Strand: +
| Region | Start | End |
| gene | 116779 | 125480 |
| mRNA | 116779 | 125480 |
| exon | 116779 | 117349 |
| exon | 118599 | 118642 |
| exon | 120244 | 120363 |
| exon | 120662 | 120803 |
| exon | 122808 | 122978 |
| exon | 123089 | 123244 |
| exon | 123501 | 123607 |
| exon | 123729 | 123819 |
| exon | 123915 | 124056 |
| exon | 124149 | 124305 |
| exon | 124400 | 124457 |
| exon | 124610 | 124741 |
| exon | 124857 | 125480 |
| CDS | 117110 | 117349 |
| CDS | 118599 | 118642 |
| CDS | 120244 | 120363 |
| CDS | 120662 | 120803 |
| CDS | 122808 | 122978 |
| CDS | 123089 | 123244 |
| CDS | 123501 | 123607 |
| CDS | 123729 | 123819 |
| CDS | 123915 | 124056 |
| CDS | 124149 | 124305 |
| CDS | 124400 | 124457 |
| CDS | 124610 | 124741 |
| CDS | 124857 | 125102 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Polysaccharide_Lyases | PL4 |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF06045.10 | Rhamnogal_lyase | 134 | 183 |
| PF14686.5 | fn3_3 | 338 | 408 |
| PF14683.5 | CBM-like | 423 | 593 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0030246 | carbohydrate binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.