PH01002107G0080's details annotation
1.Annotation
ICBR annotation: major facilitator superfamily antiporter, putative, expressed
Blast result AT3G43790 : 4.10E-38
Blast annotation: zinc induced facilitator-like 2
2.Location
Scaffold: PH01002107
Strand: +
| Region | Start | End |
| gene | 80192 | 87933 |
| mRNA | 80192 | 87933 |
| exon | 80192 | 80810 |
| exon | 81583 | 81697 |
| exon | 85674 | 85776 |
| exon | 85861 | 85914 |
| exon | 85998 | 86060 |
| exon | 86134 | 86183 |
| exon | 86263 | 86338 |
| exon | 86597 | 86870 |
| exon | 87368 | 87933 |
| CDS | 80669 | 80810 |
| CDS | 81583 | 81697 |
| CDS | 85674 | 85776 |
| CDS | 85861 | 85914 |
| CDS | 85998 | 86060 |
| CDS | 86134 | 86183 |
| CDS | 86263 | 86338 |
| CDS | 86597 | 86870 |
| CDS | 87368 | 87387 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000047 | isomerase activity, Brassinosteroid_biosynthesis carbohydrate metabolic process, carbohydrate binding, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07690.15 | MFS_1 | 92 | 246 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016021 | integral to membrane |
| GO:0055085 | transmembrane transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.