PH01002110G0080's details annotation
1.Annotation
ICBR annotation: SNF2 family N-terminal domain containing protein, expressed
Blast result AT1G03750 : 0.00E+00
Blast annotation: switch 2
2.Location
Scaffold: PH01002110
Strand: -
| Region | Start | End |
| gene | 112642 | 123311 |
| mRNA | 112642 | 123311 |
| exon | 112642 | 113588 |
| exon | 114312 | 114546 |
| exon | 115748 | 115831 |
| exon | 117623 | 117898 |
| exon | 118000 | 118126 |
| exon | 121096 | 121343 |
| exon | 121419 | 122337 |
| exon | 122774 | 123311 |
| CDS | 113278 | 113588 |
| CDS | 114312 | 114546 |
| CDS | 115748 | 115831 |
| CDS | 117623 | 117898 |
| CDS | 118000 | 118126 |
| CDS | 121096 | 121343 |
| CDS | 121419 | 122337 |
| CDS | 122774 | 122838 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | SNF2 |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00176.22 | SNF2_N | 13 | 269 |
| PF00271.30 | Helicase_C | 386 | 497 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003676 | nucleic acid binding |
| GO:0003677 | DNA binding |
| GO:0004386 | helicase activity |
| GO:0005524 | ATP binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.