PH01002111G0060's details annotation
1.Annotation
ICBR annotation: serine/threonine-protein kinase, putative, expressed
Blast result AT1G24030 : 3.00E-140
Blast annotation: Protein kinase superfamily protein
2.Location
Scaffold: PH01002111
Strand: -
| Region | Start | End |
| gene | 47820 | 50424 |
| mRNA | 47820 | 50424 |
| exon | 47820 | 48476 |
| exon | 48560 | 48682 |
| exon | 48785 | 48889 |
| exon | 48979 | 49166 |
| exon | 49236 | 49434 |
| exon | 49957 | 50141 |
| exon | 50306 | 50424 |
| CDS | 48273 | 48476 |
| CDS | 48560 | 48682 |
| CDS | 48785 | 48889 |
| CDS | 48979 | 49166 |
| CDS | 49236 | 49434 |
| CDS | 49957 | 50141 |
| CDS | 50306 | 50378 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000249 | RLK-Pelle_RLCK-VIIb (from iTAK) apoplast, lignin catabolic process, hydrolase activity, hydroquinone:oxygen_oxidoreductase_activity |
| coexpression network | CFinderM000827 | RLK-Pelle_RLCK-VIIb (from iTAK) RLK-Pelle_LRR-III (from iTAK) microtubule, protein complex, Selenocompound_metabolism apoplast, methionine biosynthetic process, cellular amino acid biosynthetic process, microtubule-based process, protein polymerization, lignin catabolic process, 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, Phagosome Cysteine_and_methionine_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00069.24 | Pkinase | 65 | 347 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004672 | protein kinase activity |
| GO:0004674 | protein serine/threonine kinase activity |
| GO:0005524 | ATP binding |
| GO:0006468 | protein phosphorylation |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.