PH01002112G0230's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT5G19050 : 2.10E-48
Blast annotation: alpha/beta-Hydrolases superfamily protein
2.Location
Scaffold: PH01002112
Strand: -
| Region | Start | End |
| gene | 157640 | 161083 |
| mRNA | 157640 | 161083 |
| exon | 157640 | 158096 |
| exon | 158173 | 158237 |
| exon | 159102 | 159210 |
| exon | 159960 | 161083 |
| CDS | 157949 | 158096 |
| CDS | 158173 | 158237 |
| CDS | 159102 | 159210 |
| CDS | 159960 | 159997 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000685 | vacuolar proton-transporting V-type ATPase complex, prefoldin complex, RLK-Pelle_L-LEC (from iTAK) Phagosome Oxidative_phosphorylation proton transport, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08538.9 | DUF1749 | 12 | 79 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.