PH01002113G0120's details annotation
1.Annotation
ICBR annotation: NLI interacting factor-like phosphatase, putative, expressed
Blast result AT5G46410 : 2.80E-62
Blast annotation: SCP1-like small phosphatase 4
2.Location
Scaffold: PH01002113
Strand: -
| Region | Start | End |
| gene | 79850 | 82689 |
| mRNA | 79850 | 82689 |
| exon | 79850 | 80245 |
| exon | 80480 | 80817 |
| exon | 81347 | 82689 |
| CDS | 80078 | 80245 |
| CDS | 80480 | 80817 |
| CDS | 81347 | 81848 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001320 | CMGC_CDK-PITSLRE (from iTAK) CAMTA Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03031.17 | NIF | 161 | 321 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0016791 | phosphatase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.