PH01002116G0120's details annotation
1.Annotation
ICBR annotation: vacuolar protein sorting-associated protein 52, putative, expressed
Blast result AT1G71270 : 0.00E+00
Blast annotation: Vps52 / Sac2 family
2.Location
Scaffold: PH01002116
Strand: -
| Region | Start | End |
| gene | 65150 | 77915 |
| mRNA | 65150 | 77915 |
| exon | 65150 | 65683 |
| exon | 65765 | 65822 |
| exon | 66289 | 66363 |
| exon | 66480 | 66614 |
| exon | 66742 | 66921 |
| exon | 67080 | 67130 |
| exon | 67804 | 67904 |
| exon | 69046 | 69104 |
| exon | 69184 | 69299 |
| exon | 69937 | 70122 |
| exon | 70551 | 70632 |
| exon | 71735 | 71826 |
| exon | 73350 | 73493 |
| exon | 73989 | 74069 |
| exon | 75176 | 75259 |
| exon | 75830 | 76108 |
| exon | 76640 | 76741 |
| exon | 77112 | 77207 |
| exon | 77452 | 77509 |
| exon | 77619 | 77915 |
| CDS | 65382 | 65683 |
| CDS | 65765 | 65822 |
| CDS | 66289 | 66363 |
| CDS | 66480 | 66614 |
| CDS | 66742 | 66921 |
| CDS | 67080 | 67130 |
| CDS | 67804 | 67904 |
| CDS | 69046 | 69104 |
| CDS | 69184 | 69299 |
| CDS | 69937 | 70122 |
| CDS | 70551 | 70632 |
| CDS | 71735 | 71826 |
| CDS | 73350 | 73493 |
| CDS | 73989 | 74069 |
| CDS | 75176 | 75259 |
| CDS | 75830 | 76108 |
| CDS | 76640 | 76741 |
| CDS | 77112 | 77207 |
| CDS | 77452 | 77509 |
| CDS | 77619 | 77719 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04129.11 | Vps52 | 81 | 121 |
| PF04129.11 | Vps52 | 213 | 673 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.