PH01002117G0120's details annotation
1.Annotation
ICBR annotation: receptor-like protein kinase precursor, putative, expressed
Blast result AT1G17750 : 0.00E+00
Blast annotation: PEP1 receptor 2
2.Location
Scaffold: PH01002117
Strand: +
| Region | Start | End |
| gene | 99202 | 104490 |
| mRNA | 99202 | 104490 |
| exon | 99202 | 103928 |
| exon | 104017 | 104490 |
| CDS | 100880 | 103928 |
| CDS | 104017 | 104348 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000004 | RLK-Pelle_LRR-XI-1 (from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08263.11 | LRRNT_2 | 26 | 71 |
| PF00560.32 | LRR_1 | 199 | 212 |
| PF13855.5 | LRR_8 | 240 | 280 |
| PF13855.5 | LRR_8 | 364 | 424 |
| PF00069.24 | Pkinase | 851 | 1119 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004672 | protein kinase activity |
| GO:0004674 | protein serine/threonine kinase activity |
| GO:0005515 | protein binding |
| GO:0005524 | ATP binding |
| GO:0006468 | protein phosphorylation |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.