PH01002121G0090's details annotation
1.Annotation
ICBR annotation: N-rich protein, putative, expressed
Blast result AT3G27090 : 2.80E-99
Blast annotation: DCD (Development and Cell Death) domain protein
2.Location
Scaffold: PH01002121
Strand: +
| Region | Start | End |
| gene | 65519 | 70291 |
| mRNA | 65519 | 70291 |
| exon | 65519 | 67104 |
| exon | 67207 | 67307 |
| exon | 68870 | 68953 |
| exon | 69029 | 69139 |
| exon | 69683 | 70291 |
| CDS | 66495 | 67104 |
| CDS | 67207 | 67307 |
| CDS | 68870 | 68953 |
| CDS | 69029 | 69139 |
| CDS | 69683 | 69724 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001223 | chloroplast, C2C2-GATA Transcription_Regulator(from iTAK) GATA Transcription_Regulator(from PlantTFDB) Oxidative_phosphorylation |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF10539.8 | Dev_Cell_Death | 183 | 309 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.