Annotation of co-expression genes

PH01002126G0150's details annotation

1.Annotation

ICBR annotation: DnaK family protein, putative, expressed

Blast result AT5G49910 : 0.00E+00
Blast annotation: chloroplast heat shock protein 70-2

2.Location

Scaffold: PH01002126
Strand: -

RegionStartEnd
gene149762156425
mRNA149762156425
exon149762150442
exon151944152342
exon152586152775
exon152897152995
exon153082153224
exon153795153874
exon154642154894
exon155787156425
CDS150032150442
CDS151944152342
CDS152586152775
CDS152897152995
CDS153082153224
CDS153795153874
CDS154642154894
CDS155787156338

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00012.19HSP7070664

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Spliceosomeheat shock 70kDa protein 1/8ko03041K03283
Protein processing in endoplasmic reticulumheat shock 70kDa protein 1/8ko04141K03283
Endocytosisheat shock 70kDa protein 1/8ko04144K03283

10.Gene Ontology

GO AccessionGO Annotation
GO:0005524ATP binding
GO:0006457protein folding
GO:0051082unfolded protein binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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