PH01002132G0300's details annotation
1.Annotation
ICBR annotation: CK1_CaseinKinase_1a.5 - CK1 includes the casein kinase 1 kinases, expressed
Blast result AT2G25760 : 0
Blast annotation: Protein kinase family protein
2.Location
Scaffold: PH01002132
Strand: +
| Region | Start | End |
| gene | 232039 | 242780 |
| mRNA | 232039 | 242780 |
| exon | 232039 | 232622 |
| exon | 234462 | 234596 |
| exon | 234684 | 234757 |
| exon | 234865 | 234934 |
| exon | 236251 | 236306 |
| exon | 236394 | 236465 |
| exon | 236986 | 237115 |
| exon | 237209 | 237427 |
| exon | 237743 | 237882 |
| exon | 237957 | 238131 |
| exon | 238304 | 238394 |
| exon | 239451 | 239689 |
| exon | 239861 | 240049 |
| exon | 240087 | 240176 |
| exon | 240592 | 240715 |
| exon | 241633 | 241971 |
| exon | 242187 | 242395 |
| exon | 242585 | 242660 |
| exon | 242706 | 242780 |
| CDS | 232419 | 232622 |
| CDS | 234462 | 234596 |
| CDS | 234684 | 234757 |
| CDS | 234865 | 234934 |
| CDS | 236251 | 236306 |
| CDS | 236394 | 236465 |
| CDS | 236986 | 237115 |
| CDS | 237209 | 237427 |
| CDS | 237743 | 237882 |
| CDS | 237957 | 238131 |
| CDS | 238304 | 238394 |
| CDS | 239451 | 239689 |
| CDS | 239861 | 240049 |
| CDS | 240087 | 240176 |
| CDS | 240592 | 240715 |
| CDS | 241633 | 241971 |
| CDS | 242187 | 242395 |
| CDS | 242585 | 242660 |
| CDS | 242706 | 242779 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001025 | NAC Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM001387 | Alanine,_aspartate_and_glutamate_metabolism SBP Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004672 | protein kinase activity |
| GO:0005524 | ATP binding |
| GO:0006468 | protein phosphorylation |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.