Annotation of co-expression genes

PH01002134G0120's details annotation

1.Annotation

ICBR annotation: double-stranded RNA binding motif containing protein, expressed

Blast result AT4G21670 : 0.00E+00
Blast annotation: C-terminal domain phosphatase-like 1

2.Location

Scaffold: PH01002134
Strand: +

RegionStartEnd
gene104378123058
mRNA104378123058
exon104378105599
exon105761105824
exon106221106302
exon106695106717
exon107765107866
exon110666110942
exon112157112633
exon113016113226
exon113416113573
exon113645113715
exon113883113988
exon114060114146
exon114771115328
exon115426115492
exon117780117913
exon117996118049
exon118450118546
exon119919120124
exon120204120284
exon120953121018
exon121481121554
exon122375122498
exon122571123058
CDS105254105599
CDS105761105824
CDS106221106302
CDS106695106717
CDS107765107866
CDS110666110942
CDS112157112633
CDS113016113226
CDS113416113573
CDS113645113715
CDS113883113988
CDS114060114146
CDS114771115328
CDS115426115492
CDS117780117913
CDS117996118049
CDS118450118546
CDS119919120124
CDS120204120284
CDS120953121018
CDS121481121554
CDS122375122498
CDS122571122666

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001800proton-transporting ATP synthase complex, catalytic core F(1),
proton-transporting two-sector ATPase complex, catalytic domain,
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances,
hydrogen ion transporting ATP synthase activity, rotational mechanism,
ATP synthesis coupled proton transport,
ATP hydrolysis coupled proton transport,
mitochondrial proton-transporting ATP synthase complex, catalytic core F(1),
ATP biosynthetic process,
ATP metabolic process,
ATP_catabolic_process
proton transport,
nucleoside-triphosphatase activity,
double-stranded RNA binding,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF03031.17NIF458569
PF00035.25dsrm910970

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003725double-stranded RNA binding
GO:0005515protein binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.