PH01002136G0320's details annotation
1.Annotation
ICBR annotation: MLA10, putative, expressed
Blast result AT3G07040 : 8.00E-77
Blast annotation: NB-ARC domain-containing disease resistance protein
2.Location
Scaffold: PH01002136
Strand: -
| Region | Start | End |
| gene | 242650 | 248052 |
| mRNA | 242650 | 248052 |
| exon | 242650 | 244813 |
| exon | 245426 | 248052 |
| CDS | 242860 | 244813 |
| CDS | 245426 | 246270 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000917 | defense response, Terpenoid_backbone_biosynthesis isopentenyl-diphosphate delta-isomerase activity, ADP_binding regulation of ARF GTPase activity, isoprenoid biosynthetic process, ARF GTPase activator activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00931.21 | NB-ARC | 177 | 467 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006952 | defense response |
| GO:0043531 | ADP binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.