PH01002143G0220's details annotation
1.Annotation
ICBR annotation: zinc finger family protein, putative, expressed
Blast result AT1G67325 : 1.80E-28
Blast annotation: Ran BP2/NZF zinc finger-like superfamily protein
2.Location
Scaffold: PH01002143
Strand: -
| Region | Start | End |
| gene | 130374 | 135405 |
| mRNA | 130374 | 135405 |
| exon | 130374 | 130905 |
| exon | 132155 | 132267 |
| exon | 132934 | 133006 |
| exon | 133100 | 133167 |
| exon | 133314 | 133476 |
| exon | 133933 | 133990 |
| exon | 134309 | 134399 |
| exon | 135152 | 135197 |
| exon | 135298 | 135405 |
| CDS | 130756 | 130905 |
| CDS | 132155 | 132267 |
| CDS | 132934 | 133006 |
| CDS | 133100 | 133167 |
| CDS | 133314 | 133476 |
| CDS | 133933 | 133990 |
| CDS | 134309 | 134399 |
| CDS | 135152 | 135197 |
| CDS | 135298 | 135312 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00641.17 | zf-RanBP | 177 | 207 |
| PF00641.17 | zf-RanBP | 224 | 253 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005622 | intracellular |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.