Annotation of co-expression genes

PH01002143G0260's details annotation

1.Annotation

ICBR annotation: proteasome subunit, putative, expressed

Blast result AT1G02090 : 1.40E-87
Blast annotation: Proteasome component (PCI) domain protein

2.Location

Scaffold: PH01002143
Strand: -

RegionStartEnd
gene176807182043
mRNA176807182043
exon176807177421
exon178121178216
exon178520178613
exon178723178774
exon178873178988
exon179229179299
exon179397179441
exon179690179779
exon180270180358
exon181051181126
exon181247182043
CDS177155177421
CDS178121178216
CDS178520178613
CDS178723178774
CDS178873178988
CDS179229179299
CDS179397179441
CDS179690179779
CDS180270180358
CDS181051181126
CDS181247181417

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000341exosome_(RNase_complex)
COP9_signalosome
coexpression networkCFinderM000577COP9_signalosome
exosome_(RNase_complex)
cell communication,
RNA_degradation
phosphatidylinositol binding,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF01399.26PCI69158

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005515protein binding
GO:0005737cytoplasm
GO:0008180signalosome

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.