Annotation of co-expression genes

PH01002144G0130's details annotation

1.Annotation

ICBR annotation: YDG/SRA domain containing protein, expressed

Blast result AT2G35160 : 2.00E-139
Blast annotation: SU(VAR)3-9 homolog 5

2.Location

Scaffold: PH01002144
Strand: -

RegionStartEnd
gene8372689259
mRNA8372689259
exon8372689259
CDS8514788929

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Transcription_Regulator(from iTAK)SET

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF02182.16SAD_SRA801957
PF05033.15Pre-SET9821078
PF00856.27SET10971229

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Lysine degradationeuchromatic histone-lysine N-methyltransferase [EC:2.1.1.43]ko00310K11420

10.Gene Ontology

GO AccessionGO Annotation
GO:0005515protein binding
GO:0005634nucleus
GO:0008270zinc ion binding
GO:0016571histone methylation
GO:0018024histone-lysine N-methyltransferase activity
GO:0034968histone lysine methylation
GO:0042393histone binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.