PH01002151G0250's details annotation
1.Annotation
ICBR annotation: hydrolase, putative, expressed
Blast result AT4G17830 : 0.00E+00
Blast annotation: Peptidase M20/M25/M40 family protein
2.Location
Scaffold: PH01002151
Strand: -
| Region | Start | End |
| gene | 238150 | 243671 |
| mRNA | 238150 | 243671 |
| exon | 238150 | 239200 |
| exon | 239253 | 239267 |
| exon | 239446 | 239479 |
| exon | 239560 | 239716 |
| exon | 239811 | 239936 |
| exon | 240050 | 240067 |
| exon | 240486 | 240543 |
| exon | 240640 | 240778 |
| exon | 241227 | 241335 |
| exon | 241432 | 241685 |
| exon | 242274 | 243671 |
| CDS | 239091 | 239200 |
| CDS | 239253 | 239267 |
| CDS | 239446 | 239479 |
| CDS | 239560 | 239716 |
| CDS | 239811 | 239936 |
| CDS | 240050 | 240067 |
| CDS | 240486 | 240543 |
| CDS | 240640 | 240778 |
| CDS | 241227 | 241335 |
| CDS | 241432 | 241685 |
| CDS | 242274 | 242609 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000606 | histone_H2A_acetylation CTP biosynthetic process, histone_H4_acetylation protein neddylation, nucleoside_diphosphate_phosphorylation UTP biosynthetic process, GTP biosynthetic process, carbohydrate phosphorylation, chromatin remodeling, |
| coexpression network | CFinderM000744 | Arginine_and_proline_metabolism Phagosome |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01546.27 | Peptidase_M20 | 98 | 440 |
| PF07687.13 | M20_dimer | 209 | 322 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Arginine and proline metabolism | acetylornithine deacetylase [EC:3.5.1.16] | ko00330 | K01438 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008152 | metabolic process |
| GO:0016787 | hydrolase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.