PH01002157G0030's details annotation
1.Annotation
ICBR annotation: WD domain, G-beta repeat domain containing protein, expressed
Blast result AT3G18860 : 0.00E+00
Blast annotation: transducin family protein / WD-40 repeat family protein
2.Location
Scaffold: PH01002157
Strand: +
| Region | Start | End |
| gene | 16179 | 34373 |
| mRNA | 16179 | 34373 |
| exon | 16179 | 16367 |
| exon | 17460 | 17794 |
| exon | 18289 | 18325 |
| exon | 18897 | 18965 |
| exon | 20696 | 20794 |
| exon | 21514 | 21586 |
| exon | 21932 | 21992 |
| exon | 22314 | 22453 |
| exon | 22870 | 23059 |
| exon | 23273 | 23334 |
| exon | 23708 | 23796 |
| exon | 24609 | 24645 |
| exon | 25813 | 25901 |
| exon | 26557 | 26629 |
| exon | 26704 | 26763 |
| exon | 27036 | 27182 |
| exon | 27243 | 27322 |
| exon | 27816 | 27902 |
| exon | 31271 | 31436 |
| exon | 32223 | 32300 |
| exon | 32504 | 32640 |
| exon | 32907 | 32983 |
| exon | 33134 | 33203 |
| exon | 33493 | 34373 |
| CDS | 16320 | 16367 |
| CDS | 17460 | 17794 |
| CDS | 18289 | 18325 |
| CDS | 18897 | 18965 |
| CDS | 20696 | 20794 |
| CDS | 21514 | 21586 |
| CDS | 21932 | 21992 |
| CDS | 22314 | 22453 |
| CDS | 22870 | 23059 |
| CDS | 23273 | 23334 |
| CDS | 23708 | 23796 |
| CDS | 24609 | 24645 |
| CDS | 25813 | 25901 |
| CDS | 26557 | 26629 |
| CDS | 26704 | 26763 |
| CDS | 27036 | 27182 |
| CDS | 27243 | 27322 |
| CDS | 27816 | 27902 |
| CDS | 31271 | 31436 |
| CDS | 32223 | 32300 |
| CDS | 32504 | 32640 |
| CDS | 32907 | 32983 |
| CDS | 33134 | 33203 |
| CDS | 33493 | 33621 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000789 | Glycine,_serine_and_threonine_metabolism Proteasome |
| coexpression network | CFinderM001421 | protein catabolic process, Proteasome Glycine,_serine_and_threonine_metabolism protein phosphatase type 2A complex, cytoplasm, protein phosphatase type 2A regulator activity, Rab GDP-dissociation inhibitor activity, nucleoside-triphosphatase activity, hydrolase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00400.31 | WD40 | 9 | 40 |
| PF00400.31 | WD40 | 99 | 133 |
| PF00400.31 | WD40 | 250 | 287 |
| PF00400.31 | WD40 | 291 | 324 |
| PF09070.10 | PFU | 414 | 522 |
| PF08324.10 | PUL | 565 | 771 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Protein processing in endoplasmic reticulum | phospholipase A-2-activating protein | ko04141 | K14018 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.