PH01002159G0270's details annotation
1.Annotation
ICBR annotation: protein of unknown function DUF1296 domain containing protein, expressed
Blast result - : -
Blast annotation: -
2.Location
Scaffold: PH01002159
Strand: -
| Region | Start | End |
| gene | 175014 | 176756 |
| mRNA | 175014 | 176756 |
| exon | 175014 | 175355 |
| exon | 175564 | 175623 |
| exon | 175684 | 175739 |
| exon | 175983 | 176756 |
| CDS | 175185 | 175355 |
| CDS | 175564 | 175623 |
| CDS | 175684 | 175739 |
| CDS | 175983 | 176139 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000425 | Golgi apparatus, B3 Transcription_Regulator(from PlantTFDB) membrane coat, |
| coexpression network | CFinderM001454 | Selenocompound_metabolism Sulfur_metabolism Cysteine_and_methionine_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF06972.10 | DUF1296 | 8 | 53 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.