Gene details

Annotation of co-expression genes

PH01002160G0180's details annotation

1.Annotation

ICBR annotation: auxin response factor, putative, expressed

Blast result AT5G62000 : 0.00E+00
Blast annotation: auxin response factor 2

2.Location

Scaffold: PH01002160
Strand: +

3.Network

Co-expression Network Category	Global Network	Conditional Network
Co-expression Positive	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Co-expression Negative	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Predict protein-portein interaction	null
miRNA-targets relationship	null

4.Functional module

Method	Module ID	Function Annotation
coexpression network	CFinderM000899	glucose-6-phosphate dehydrogenase activity, glucose metabolic process, galactosyltransferase activity, NADP binding, Glutathione_metabolism Pentose_phosphate_pathway Glycine,_serine_and_threonine_metabolism Phenylalanine,_tyrosine_and_tryptophan_biosynthesis Glycosaminoglycan_biosynthesis_-_chondroitin_sulfate_/_dermatan_sulfate Glycosaminoglycan_biosynthesis_-_heparan_sulfate_/_heparin protein glycosylation, phosphoserine phosphatase activity, hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides, chorismate mutase activity, chorismate metabolic process,

5.Cis-elements

6.Expression profilings

7.Gene family

Category	Family
Transcription_Regulator(from iTAK)	B3-ARF
Transcription_Regulator(from PlantTFDB)	ARF

8.Protein domain

9.KEGG Pathway

Pathway	KEGG Ortholog	Pathway ID	KO
null	null	null	null

10.Gene Ontology

GO Accession	GO Annotation
GO:0003677	DNA binding
GO:0005634	nucleus
GO:0006355	regulation of transcription, DNA-dependent
GO:0009725	response to hormone stimulus
GO:0046983	protein dimerization activity

      Maintained by Xuelian Ma  - Zhen Su's Lab -  China Agricultural University

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