PH01002164G0240's details annotation
1.Annotation
ICBR annotation: 60S ribosomal protein L18a-1, putative, expressed
Blast result AT1G17080 : 5.00E-37
Blast annotation: Ribosomal protein L18ae family
2.Location
Scaffold: PH01002164
Strand: +
| Region | Start | End |
| gene | 143482 | 146418 |
| mRNA | 143482 | 146418 |
| exon | 143482 | 143891 |
| exon | 144638 | 144691 |
| exon | 144978 | 145056 |
| exon | 145149 | 145266 |
| exon | 145821 | 146418 |
| CDS | 143591 | 143891 |
| CDS | 144638 | 144691 |
| CDS | 144978 | 145056 |
| CDS | 145149 | 145266 |
| CDS | 145821 | 145880 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003735 | structural constituent of ribosome |
| GO:0005840 | ribosome |
| GO:0006412 | translation |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.