PH01002172G0250's details annotation
1.Annotation
ICBR annotation: WD domain, G-beta repeat domain containing protein, expressed
Blast result AT5G50230 : 2.00E-152
Blast annotation: Transducin/WD40 repeat-like superfamily protein
2.Location
Scaffold: PH01002172
Strand: -
| Region | Start | End |
| gene | 153106 | 157134 |
| mRNA | 153106 | 157134 |
| exon | 153106 | 154469 |
| exon | 155098 | 155293 |
| exon | 155398 | 155579 |
| exon | 155909 | 156041 |
| exon | 156520 | 157134 |
| CDS | 153450 | 154469 |
| CDS | 155098 | 155293 |
| CDS | 155398 | 155579 |
| CDS | 155909 | 156041 |
| CDS | 156520 | 156860 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08614.10 | ATG16 C | 157 | 283 |
| PF00400.31 | WD40 | 335 | 371 |
| PF00400.31 | WD40 | 419 | 456 |
| PF00400.31 | WD40 | 479 | 496 |
| PF00400.31 | WD40 | 562 | 583 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.