PH01002182G0230's details annotation
1.Annotation
ICBR annotation: 25.3 kDa vesicle transport protein, putative, expressed
Blast result AT1G11890 : 1.60E-34
Blast annotation: Synaptobrevin family protein
2.Location
Scaffold: PH01002182
Strand: -
| Region | Start | End |
| gene | 158807 | 162589 |
| mRNA | 158807 | 162589 |
| exon | 158807 | 159154 |
| exon | 159716 | 159792 |
| exon | 160140 | 160286 |
| exon | 161918 | 162589 |
| CDS | 158981 | 159154 |
| CDS | 159716 | 159792 |
| CDS | 160140 | 160286 |
| CDS | 161918 | 162395 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00957.20 | Synaptobrevin | 176 | 244 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016021 | integral to membrane |
| GO:0016192 | vesicle-mediated transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.