PH01002189G0060's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT3G20800 : 8.60E-86
Blast annotation: Cell differentiation, Rcd1-like protein
2.Location
Scaffold: PH01002189
Strand: +
| Region | Start | End |
| gene | 24794 | 32690 |
| mRNA | 24794 | 32690 |
| exon | 24794 | 25691 |
| exon | 26947 | 26969 |
| exon | 27323 | 27394 |
| exon | 27534 | 27623 |
| exon | 27800 | 27812 |
| exon | 29293 | 29399 |
| exon | 30381 | 30485 |
| exon | 30845 | 30940 |
| exon | 31752 | 31942 |
| exon | 32030 | 32099 |
| exon | 32222 | 32690 |
| CDS | 25412 | 25691 |
| CDS | 26947 | 26969 |
| CDS | 27323 | 27394 |
| CDS | 27534 | 27623 |
| CDS | 27800 | 27812 |
| CDS | 29293 | 29399 |
| CDS | 30381 | 30485 |
| CDS | 30845 | 30940 |
| CDS | 31752 | 31942 |
| CDS | 32030 | 32099 |
| CDS | 32222 | 32329 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001093 | Rcd1-like Transcription_Regulator(from iTAK) phagocytosis, cytoskeleton, protein dephosphorylation, protein serine/threonine phosphatase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | Rcd1-like |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04078.12 | Rcd1 | 101 | 196 |
| PF04078.12 | Rcd1 | 231 | 365 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.