PH01002197G0290's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT5G58100 : 6.00E-40
Blast annotation: -
2.Location
Scaffold: PH01002197
Strand: +
| Region | Start | End |
| gene | 199245 | 202377 |
| mRNA | 199245 | 202377 |
| exon | 199245 | 200115 |
| exon | 201363 | 201451 |
| exon | 201765 | 201863 |
| exon | 201938 | 202053 |
| exon | 202140 | 202258 |
| exon | 202334 | 202377 |
| CDS | 199896 | 200115 |
| CDS | 201363 | 201451 |
| CDS | 201765 | 201863 |
| CDS | 201938 | 202053 |
| CDS | 202140 | 202258 |
| CDS | 202334 | 202344 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001041 | isoprenoid biosynthetic process, |
| coexpression network | CFinderM001672 | STE_STE11 (from iTAK) |
| coexpression network | CFinderM001750 | mTERF Transcription_Regulator(from iTAK) endonuclease activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.