PH01002204G0080's details annotation
1.Annotation
ICBR annotation: stripe rust resistance protein Yr10, putative, expressed
Blast result AT3G07040 : 1.30E-48
Blast annotation: NB-ARC domain-containing disease resistance protein
2.Location
Scaffold: PH01002204
Strand: +
| Region | Start | End |
| gene | 54342 | 64879 |
| mRNA | 54342 | 64879 |
| exon | 54342 | 56127 |
| exon | 56303 | 56374 |
| exon | 57412 | 57416 |
| exon | 57880 | 57932 |
| exon | 59536 | 59615 |
| exon | 60235 | 62176 |
| exon | 62841 | 64547 |
| exon | 64679 | 64879 |
| CDS | 55217 | 56127 |
| CDS | 56303 | 56374 |
| CDS | 57412 | 57416 |
| CDS | 57880 | 57932 |
| CDS | 59536 | 59615 |
| CDS | 60235 | 62176 |
| CDS | 62841 | 64547 |
| CDS | 64679 | 64780 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00931.21 | NB-ARC | 173 | 303 |
| PF00931.21 | NB-ARC | 372 | 559 |
| PF00931.21 | NB-ARC | 1029 | 1143 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006952 | defense response |
| GO:0043531 | ADP binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.