Annotation of co-expression genes

PH01002206G0170's details annotation

1.Annotation

ICBR annotation: bromodomain domain containing protein, expressed

Blast result AT5G55040 : 1.50E-44
Blast annotation: DNA-binding bromodomain-containing protein

2.Location

Scaffold: PH01002206
Strand: -

RegionStartEnd
gene129791141085
mRNA129791141085
exon129791131990
exon132089132237
exon132777133782
exon133876133944
exon136823136921
exon137021137066
exon137162141085
CDS130434131990
CDS132089132237
CDS132777133782
CDS133876133944
CDS136823136921
CDS137021137066
CDS137162137226

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001637protein binding,
small GTPase mediated signal transduction,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00439.24Bromodomain1495

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005515protein binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.